End-to-end bioinformatics pipeline for large-scale Digital RNA-Seq analysis with Nextflow and Docker.
Standard RNA-Seq analysis pipeline with QC, alignment, quantification and DEG analysis.
LSTM time series prediction model for clinical data analysis in healthcare context.
FastQCat utility for efficient multi-dataset aggregation and Downsampling workflow for standardized input.
Nextflow, Docker/Singularity, AWS/GCP, FastQC, STAR, Salmon, Kallisto, GATK
R, Python, LSTM/Deep Learning, Time Series Analysis, Cross-Validation
Bash Scripting, HPC (SLURM), GPU Acceleration, Parabricks, STOMICS, Nanopore